What Changed in STP Phase 2

Reporting ElementSTP Phase 1STP Phase 2
Gross paymentSingle total gross figureDisaggregated by income type
AllowancesIncluded in grossReported separately by type (travel, tool, etc.)
Tax treatmentNot reportedTax treatment code required for each employee
Income typeNot reportedIncome type code required (SAW, WHM, etc.)
CessationNot reportedCessation date and reason required when employee leaves
Child supportNot reportedGarnishee and deduction amounts reported if applicable
Country codeNot applicableRequired for foreign employment income

Income Types — Getting This Right

Every employee's pay event must report an income type code. Getting this wrong means employees may receive incorrect ATO pre-fill data on their tax returns, and the ATO may flag the employer for review.

  • SAW — Salary and Wages. This is the code for the vast majority of Australian employees — anyone on a standard employment contract paid a salary or hourly wage
  • WHM — Working Holiday Maker. Must be used for employees on 417 or 462 visas. Critical — using SAW instead of WHM means the 15% flat rate is not applied correctly and the employee's tax return pre-fill will be wrong
  • CLO — Closely Held Payee. Used for family members employed in a family business or trust where the employment relationship is not truly arm's length
  • LAB — Labour Hire. Where a labour hire firm is paying the worker and on-hiring to the end employer
  • VOL — Voluntary Agreement. Used where a contractor has entered into a voluntary agreement for PAYG withholding to apply to their payments

The Indian CA team reviews each employee's visa status and employment arrangement and assigns the correct income type during onboarding. Any changes (e.g. a WHM whose visa changes) are updated immediately.

Tax Treatment Codes — What the Indian Team Configures

STP Phase 2 requires a tax treatment code for each employee. This drives the correct withholding calculation. The Indian team sets these up based on information from the employee's TFN declaration:

  • Regular — standard PAYG withholding applies to Australian residents
  • No TFN — highest marginal rate withheld where employee has not provided a TFN
  • HELP — employee has a HELP, VSL, SSL, or other study debt — additional withholding applies
  • Seniors/Pensioners — seniors and pensioners tax offset applies
  • Tax-free threshold — whether the employee has claimed the tax-free threshold on their TFN declaration (affects withholding scale)

Allowance Disaggregation

Under STP2, allowances that were previously bundled into gross wages must be reported separately by type. The Indian team separates these in payroll setup:

  • Travel allowances (per-kilometre or daily travel)
  • Tool and equipment allowances
  • Uniform and laundry allowances
  • Overtime meal allowances
  • Site and remote area allowances
  • LAFHA (Living Away From Home Allowance)

Each allowance type has its own STP2 classification and tax treatment. Some allowances are below the ATO reasonable amounts and are reportable but not taxable — the Indian team codes these correctly to avoid over-withholding.

Payday Super — STP2 Connection (from July 2026)

From 1 July 2026, Payday Super requires super contributions to be paid to the employee's fund on each payday rather than quarterly. STP Phase 2 data provides the ATO with the payroll baseline against which Payday Super compliance is checked. The Indian CA team processes both the payroll and the super payment run on each payday — ensuring STP2 and Payday Super compliance are handled together. See our full Payday Super guide.

About This Article
Written by Sharma Jyoti, CA (ICAI) — Founder, Sharma Jyoti and Co. We are an ICAI-registered Chartered Accountant firm providing outsourced bookkeeping and accounting services to Australian, US, UK and Canadian businesses. Learn more about our firm →

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Frequently Asked Questions

Yes. STP2 reporting happens within Xero Payroll or KeyPay — the payroll software handles ATO transmission automatically in the correct STP2 format. The Indian team correctly configures income types, tax treatment codes, and allowance disaggregation for each employee, then processes each pay run. The software does the rest.
Using income type SAW instead of WHM for working holiday maker employees (417/462 visa holders). This means the 15% flat rate is not signalled correctly, causing under or over-withholding and incorrect ATO pre-fill on the employee's tax return. The Indian team checks visa status during employee onboarding and applies WHM income type from the first pay run.
Yes. Under STP2, allowances must be disaggregated and reported by type — travel, tool, uniform, overtime meal, site allowance, LAFHA. They can no longer be bundled into gross wages. The Indian team sets up each allowance as a separate pay item in Xero Payroll with the correct STP2 classification.
From July 2026, Payday Super requires super to be paid on each payday. STP2 provides the ATO with payroll data to verify Payday Super compliance. The Indian team processes both the pay run and the super payment on each payday, ensuring both STP2 reporting and Payday Super obligation are met simultaneously.
A$200–$600/month for payroll processing (5–30 employees) including STP2 compliance, Payday Super, leave management, and payslips. Full finance function including bookkeeping, BAS, payroll, and accounts payable from A$800–$2,000/month. Compare to a local payroll specialist at A$55,000–$75,000/year all-in.